PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN27924.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 343aa    MW: 37160.7 Da    PI: 6.5755
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN27924.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP113.52.9e-3522123295
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......ssssaseceaesssssasnsssg...... 88 
                 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l ++      +       +a++ +++++n+++g      
  KHN27924.1  22 TGRKDRHSKVYTAKGPRDRRVRLSAHTAIEFYDVQDRLGYDRPSKAVDWLIKKAKNAIDKLGELppwhptP------NTAADAENNNNNNNAGssdmai 114
                 79**************************************************************5543221......2222222222222222234454 PP

         TCP  89 ..kaaksaa 95 
                   ++++s+ 
  KHN27924.1 115 aaEQSESSG 123
                 442222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.1E-3322127IPR005333Transcription factor, TCP
PROSITE profilePS5136932.5372482IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MGMKSTGGEI VQVQGGHIVR STGRKDRHSK VYTAKGPRDR RVRLSAHTAI EFYDVQDRLG  60
YDRPSKAVDW LIKKAKNAID KLGELPPWHP TPNTAADAEN NNNNNNAGSS DMAIAAEQSE  120
SSGYNFQLQR QLGEDHDNHH SAFIPSPIDT DAIAFFPTTT ATSSINFQTY PPDIISRTNN  180
STEDLGLSLH SFQDPGLIHG QTQAGANQTQ TPSNDQSLFS GSTQVGFEAN YPRIVTWNSD  240
ASIDMNRTGF MVNSPALLGQ GGSAAFSQRG TLQSSFSPSL RPWSEIPMAS SEHHKSQPIQ  300
QASIFGSRFL SDALPGFCIP ARIQGEDGVG PDKPSSSSPN SHH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003540389.10.0PREDICTED: transcription factor TCP4-like
SwissprotQ8LPR56e-70TCP4_ARATH; Transcription factor TCP4
TrEMBLA0A0B2R6X50.0A0A0B2R6X5_GLYSO; Transcription factor TCP4
STRINGGLYMA12G33640.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.34e-68TCP family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]